Aggregated animal subject metadata from 11 UCSF preclinical TBI publications and 1 ODC-TBI published dataset

DOI:10.34945/F51P49

DATASET CITATION

Chou A., Lee S., Krukowski K., Guglielmetti C., Nolan A., Hawkins B. E., Chaumeil M. M., Beattie M. S., Bresnahan J. C., Rosi S., Ferguson A. R. (2021) Aggregated animal subject metadata from 11 UCSF preclinical TBI publications and 1 ODC-TBI published dataset. ODC-TBI:566 http://doi.org/10.34945/F51P49

ABSTRACT

STUDY PURPOSE: The dataset was created to provide descriptions of the animal subjects with data uploaded to the ODC-TBI (but not necessarily published yet).

DATA COLLECTED: The metadata was aggregated from 11 papers published from the labs of Susanna Rosi, Michael S Beattie, Jacqueline C Bresnahan, and Adam R Ferguson from UCSF as well as the dataset published by Bridget E Hawkins through the ODC-TBI (DOI:10.34945/F51591). The animal species, strain, sex, genotype and age at time of injury are included in addition to the preclinical TBI model used, the experimental group the subject was assigned to, and the time post-injury of the data entry. The dataset contains a total of N=1250 animals with 3313 observations total. Subject IDs are provided to align this data to the corresponding datasets when they are published.

CONCLUSIONS:

KEYWORDS

Preclinical traumatic brain injury; NINDS Common Data Elements

PROVENANCE / ORIGINATING PUBLICATIONS

• Andersen, C.R., Wolf, J.T., Jennings, K., Prough, D.S., Hawkins, B.E. (2020) Moody Project Survival Analysis Morris Water Maze Dataset. ODC-TBI:408. DOI:10.34945/F51591

Originating publication.

• Morganti, J. M., Jopson, T. D., Liu, S., Riparip, L. K., Guandique, C. K., Gupta, N., Ferguson, A. R., & Rosi, S. (2015). CCR2 antagonism alters brain macrophage polarization and ameliorates cognitive dysfunction induced by traumatic brain injury. The Journal of neuroscience : the official journal of the Society for Neuroscience, 35(2), 748–760. https://doi.org/10.1523/JNEUROSCI.2405-14.2015

Originating publication.

• Chou, A., Krukowski, K., Morganti, J. M., Riparip, L. K., & Rosi, S. (2018). Persistent Infiltration and Impaired Response of Peripherally-Derived Monocytes after Traumatic Brain Injury in the Aged Brain. International journal of molecular sciences, 19(6), 1616. https://doi.org/10.3390/ijms19061616

Originating publication.

• Krukowski, K., Chou, A., Feng, X., Tiret, B., Paladini, M. S., Riparip, L. K., Chaumeil, M. M., Lemere, C., & Rosi, S. (2018). Traumatic Brain Injury in Aged Mice Induces Chronic Microglia Activation, Synapse Loss, and Complement-Dependent Memory Deficits. International journal of molecular sciences, 19(12), 3753. https://doi.org/10.3390/ijms19123753

Originating publication.

• Morganti, J. M., Riparip, L. K., & Rosi, S. (2016). Call Off the Dog(ma): M1/M2 Polarization Is Concurrent following Traumatic Brain Injury. PloS one, 11(1), e0148001. https://doi.org/10.1371/journal.pone.0148001

Originating publication.

• Morganti, J. M., Riparip, L. K., Chou, A., Liu, S., Gupta, N., & Rosi, S. (2016). Age exacerbates the CCR2/5-mediated neuroinflammatory response to traumatic brain injury. Journal of neuroinflammation, 13(1), 80. https://doi.org/10.1186/s12974-016-0547-1

Originating publication.

• Guglielmetti, C., Chou, A., Krukowski, K., Najac, C., Feng, X., Riparip, L. K., Rosi, S., & Chaumeil, M. M. (2017). In vivo metabolic imaging of Traumatic Brain Injury. Scientific reports, 7(1), 17525. https://doi.org/10.1038/s41598-017-17758-4

Originating publication.

• Nolan, A., Hennessy, E., Krukowski, K., Guglielmetti, C., Chaumeil, M. M., Sohal, V. S., & Rosi, S. (2018). Repeated Mild Head Injury Leads to Wide-Ranging Deficits in Higher-Order Cognitive Functions Associated with the Prefrontal Cortex. Journal of neurotrauma, 35(20), 2425–2434. https://doi.org/10.1089/neu.2018.5731

Originating publication.

• Chou, A., Krukowski, K., Jopson, T., Zhu, P. J., Costa-Mattioli, M., Walter, P., & Rosi, S. (2017). Inhibition of the integrated stress response reverses cognitive deficits after traumatic brain injury. Proceedings of the National Academy of Sciences of the United States of America, 114(31), E6420–E6426. https://doi.org/10.1073/pnas.1707661114

Originating publication.

• Chou, A., Morganti, J. M., & Rosi, S. (2016). Frontal Lobe Contusion in Mice Chronically Impairs Prefrontal-Dependent Behavior. PloS one, 11(3), e0151418. https://doi.org/10.1371/journal.pone.0151418

Originating publication.

• Delbary-Gossart, S., Lee, S., Baroni, M., Lamarche, I., Arnone, M., Canolle, B., Lin, A., Sacramento, J., Salegio, E. A., Castel, M. N., Delesque-Touchard, N., Alam, A., Laboudie, P., Ferzaz, B., Savi, P., Herbert, J. M., Manley, G. T., Ferguson, A. R., Bresnahan, J. C., Bono, F., … Beattie, M. S. (2016). A novel inhibitor of p75-neurotrophin receptor improves functional outcomes in two models of traumatic brain injury. Brain : a journal of neurology, 139(Pt 6), 1762–1782. https://doi.org/10.1093/brain/aww074

Originating publication.

• Lee, S., Mattingly, A., Lin, A., Sacramento, J., Mannent, L., Castel, M. N., Canolle, B., Delbary-Gossart, S., Ferzaz, B., Morganti, J. M., Rosi, S., Ferguson, A. R., Manley, G. T., Bresnahan, J. C., & Beattie, M. S. (2016). A novel antagonist of p75NTR reduces peripheral expansion and CNS trafficking of pro-inflammatory monocytes and spares function after traumatic brain injury. Journal of neuroinflammation, 13(1), 88. https://doi.org/10.1186/s12974-016-0544-4

Originating publication.

• Chou A, Espin AT, Huie JR, Krukowski K, Lee S, Nolan A, et al. Open Data Commons for Preclinical Traumatic Brain Injury Research: Empowering Data Sharing and Big Data Analytics. bioRxiv. 2021. doi:10.1101/2021.03.15.435178

Originating publication.

• Chou A, Torres-Espín A, Huie JR, Krukowski K, Lee S, Nolan A, Guglielmetti C, Hawkins BE, Chaumeil MM, Manley GT, Beattie MS, Bresnahan JC, Martone ME, Grethe JS, Rosi S, Ferguson AR. Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research. Neurotrauma Rep. 2022 Apr 5;3(1):139-157. doi: 10.1089/neur.2021.0061. PMID: 35403104; PMCID: PMC8985540.

Originating publication

NOTES

DATASET INFO

Contact: Chou Austin (austin.chou@ucsf.edu), Ferguson Adam (adam.ferguson@ucsf.edu)

Lab: TOP-NT UCSF

ODC-TBI Accession:566

Records in Dataset: 3313

Fields per Record: 10

Last updated: 2022-04-25 (See changelog)

Date published: 2022-04-20

Downloads: 50

Files: 2

LICENSE

Creative Commons Attribution License (CC-BY 4.0)

FUNDING AND ACKNOWLEDGEMENTS

CONTRIBUTORS

Chou, Austin [ORCID:0000-0003-4328-5811]

Brain and Spinal Injury Center, University of California (UCSF)

Lee, Sangmi

Brain and Spinal Injury Center, University of California (UCSF)

Krukowski, Karen [ORCID:0000-0003-0281-8917]

Brain and Spinal Injury Center, University of California (UCSF)

Guglielmetti, Caroline [ORCID:0000-0003-0305-1631]

Surbeck Laboratory of Advanced Imaging, Department of Radiology and Biomedical Imaging, UCSF

Nolan, Amber

Brain and Spinal Injury Center, University of California (UCSF)

Hawkins, Bridget E. [ORCID:0000-0002-1887-3657]

The Moody Project for Translational Traumatic Brain Injury Research, University of Texas Medical Branch

Chaumeil, Myriam M. [ORCID:0000-0002-2110-4613]

Surbeck Laboratory of Advanced Imaging, Department of Radiology and Biomedical Imaging, UCSF

Beattie, Michael S. [ORCID:0000-0001-9463-3631]

Brain and Spinal Injury Center, University of California (UCSF)

Bresnahan, Jacqueline C. [ORCID:0000-0003-2243-7054]

Brain and Spinal Injury Center, University of California (UCSF)

Rosi, Susanna [ORCID:0000-0002-9269-3638]

Brain and Spinal Injury Center, University of California (UCSF)

Ferguson, Adam R. [ORCID:0000-0001-7102-1608]

Brain and Spinal Injury Center, University of California (UCSF)